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Ecogenomics Inc p re ss r
P Re Ss R, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/p+re+ss+r/p+r+re+ss/pm41274873-523-9-46
Average 86 stars, based on 1 article reviews
p re ss r - by Bioz Stars, 2026-11
86/100 stars

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Article Title: Longitudinal gut microbiota tracking reveals the dynamics of horizontal gene transfer.
Article Snippet: 1023 1024 Tables 1025 AR TI CL E IN P RE SS R (version 4.0.3) R Foundation https://www.r-project.org/ Python (version 3.7.4) Python https://www.python.org KneadData (version 0.4.6.1) 44 https://huttenhower.sph.harvard.edu/ kneaddata/ Megahit 86 https://github.com/voutcn/megahit dRep (version 3.4.3) 48 https://github.com/MrOlm/drep Metawrap (version 1.3.2) 46 https://github.com/bxlab/metaWRAP CheckM (version 1.2.2) 47 https://github.com/Ecogenomics/Ch eckM GTDBTk (version 2.1.1) 51 https://github.com/Ecogenomics/GT DBTk MASH (version 2.3) 49 https://github.com/marbl/Mash FastANI (version 1.33) 50 https://github.com/ParBLiSS/FastAN I Bowtie 2 (version 2.5.1) 53 https://github.com/BenLangmead/bo wtie2 CD-HIT (version 4.8.1) 63 https://sites.google.com/view/cd-hit Prodigal (version 2.6.3) 64 https://github.com/hyattpd/Prodigal Barrnap (version 0.9) 87 https://github.com/tseemann/barrna p Prokka (version 1.14.6) 88 https://github.com/tseemann/prokka Blastn (version 2.6.0) 58 https://ftp.ncbi.nlm.nih.gov/blast/exe cutables/blast+/LATEST/ eggNOG-mapper (version 2.1.11) 65 http://eggnog5.embl.de Resistance Gene Identifier (RGI) 67 https://github.com/arpcard/rgi Traitar (version 1.1.1) 72 https://github.com/hzi-bifo/traitar Fastspar (version 1.0.0) 25 https://github.com/scwatts/fastspar UBCGtree (version 2.0) 52 http://leb.snu.ac.kr/ubcg2/about vegan R package 81 https://cran.r- project.org/web/packages/vegan/ind ex.html lme4 R package 80 https://cran.r- project.org/web/packages/lme4/inde x.html lmtest R package 84 https://cran.r- project.org/web/packages/lmtest/ind ex.html ggplot2 89 https://cran.r- project.org/web/packages/ggplot2/in dex.html igraph v1.2.6 76 https://cran.r- project.org/web/packages/igraph/ind ex.html ggraph v2.0.5 77 https://cran.r- project.org/web/packages/ggraph/in dex.html ncf v 1.3-2 https://github.com/objornstad/ncf lme4qtl v0.2.2 78 https://rdrr.io/github/variani/lme4qtl/ AR TI CL E IN P RE SS man/relmatLmer.html ComplexHeatmap v2.18.0 90 https://github.com/jokergoo/Complex Heatmap Database Pfam database 66 https://www.ebi.ac.uk/interpro/entry/ pfam dbCAN 91 https://bcb.unl.edu/dbCAN/ CARD database 67 https://card.mcmaster.ca/analyze/rgi 1027 AR TI CL E IN P RE SS 1028 Figure Legends 1029 Fig. 1.



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86
Ecogenomics Inc p re ss r
P Re Ss R, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/p+re+ss+r/p+r+re+ss/pm41274873-523-9-46
Average 86 stars, based on 1 article reviews
p re ss r - by Bioz Stars, 2026-11
86/100 stars
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